Re: Spin calling John 100% identity (Human & Gekko)

spintronic wrote:
According to you this doesnt exist. 100% sequence identity in a human,
and a

First attempt. Enjoy.

Fascinating. I don't believe it. The most likely explanation in my mind is that the gecko cDNA library was contaminated with some human sequences. Unfortunately there are no other sequences to use in checking the accuracy of that EST, i.e. no Gekko atpase sequences, and the study the sequence comes from is unpublished. But this is contrary to all results in all better-controlled studies.

How did you find this? Did you just start Blasting random human sequences? However you did it, it was quite a feat.


lcl|15957
Length=386

Score = 704 bits (381), Expect = 0.0
Identities = 381/381 (100%), Gaps = 0/381 (0%)
Strand=Plus/Plus

Query 4427
CACACCACTCAGTGCATGGCGGCCGATGGGCAGCCAACCCAAACCCGCGCCTTTCCTTGT 4486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6
CACACCACTCAGTGCATGGCGGCCGATGGGCAGCCAACCCAAACCCGCGCCTTTCCTTGT 65

Query 4487
TCCACTGCAGACTCAGATACAGATGCGAAAAATTCCTTCTTCCACCGCCCTTCTCGTTCT 4546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66
TCCACTGCAGACTCAGATACAGATGCGAAAAATTCCTTCTTCCACCGCCCTTCTCGTTCT 125

Query 4547
GTAAAGAAAGAAAAGAAACATAGCCTTTCTGCATATATTCTAAACGTCTCTCTGCCTCTG 4606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126
GTAAAGAAAGAAAAGAAACATAGCCTTTCTGCATATATTCTAAACGTCTCTCTGCCTCTG 185

Query 4607
TCTGACATGGGGCCACCCCACAGGTCAGAGTGGTGGTAGAACCCCTTCAGGACTCCCAGC 4666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186
TCTGACATGGGGCCACCCCACAGGTCAGAGTGGTGGTAGAACCCCTTCAGGACTCCCAGC 245

Query 4667
CGTGGTCAGGCTCTGAATACTCCCTTCCCAACATCCAGACTGCTGGGCCTTTGGCATCCA 4726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246
CGTGGTCAGGCTCTGAATACTCCCTTCCCAACATCCAGACTGCTGGGCCTTTGGCATCCA 305

Query 4727
CTTACATTAGAACCCACGTTTGTTTCAGAGCACATTTTGGACTTTCACTGTTGGGAAATG 4786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306
CTTACATTAGAACCCACGTTTGTTTCAGAGCACATTTTGGACTTTCACTGTTGGGAAATG 365

Query 4787 AATGAATTTATAACATGCCTG 4807
|||||||||||||||||||||
Sbjct 366 AATGAATTTATAACATGCCTG 386



Here are the 2 results of this search.

1)



type 8A, member 2 (ATP8A2), mRNA.
ACCESSION NM_016529
VERSION NM_016529.4 GI:117168244
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates;
Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5006)
AUTHORS Dunham,A., Matthews,L.H., Burton,J., Ashurst,J.L.,
Howe,K.L.,
Ashcroft,K.J., Beare,D.M., Burford,D.C., Hunt,S.E.,
Griffiths-Jones,S., Jones,M.C., Keenan,S.J., Oliver,K.,
Scott,C.E.,
Ainscough,R., Almeida,J.P., Ambrose,K.D., Andrews,D.T.,
Ashwell,R.I., Babbage,A.K., Bagguley,C.L., Bailey,J.,
Bannerjee,R.,
Barlow,K.F., Bates,K., Beasley,H., Bird,C.P., Bray-
Allen,S.,
Brown,A.J., Brown,J.Y., Burrill,W., Carder,C.,
Carter,N.P.,
Chapman,J.C., Clamp,M.E., Clark,S.Y., Clarke,G.,
Clee,C.M.,
Clegg,S.C., Cobley,V., Collins,J.E., Corby,N.,
Coville,G.J.,
Deloukas,P., Dhami,P., Dunham,I., Dunn,M., Earthrowl,M.E.,
Ellington,A.G., Faulkner,L., Frankish,A.G., Frankland,J.,
French,L., Garner,P., Garnett,J., Gilbert,J.G.,
Gilson,C.J.,
Ghori,J., Grafham,D.V., Gribble,S.M., Griffiths,C.,
Hall,R.E.,
Hammond,S., Harley,J.L., Hart,E.A., Heath,P.D.,
Howden,P.J.,
Huckle,E.J., Hunt,P.J., Hunt,A.R., Johnson,C., Johnson,D.,
Kay,M.,
Kimberley,A.M., King,A., Laird,G.K., Langford,C.J.,
Lawlor,S.,
Leongamornlert,D.A., Lloyd,D.M., Lloyd,C., Loveland,J.E.,
Lovell,J., Martin,S., Mashreghi-Mohammadi,M.,
McLaren,S.J.,
McMurray,A., Milne,S., Moore,M.J., Nickerson,T.,
Palmer,S.A.,
Pearce,A.V., Peck,A.I., Pelan,S., Phillimore,B.,
Porter,K.M.,
Rice,C.M., Searle,S., Sehra,H.K., Shownkeen,R.,
Skuce,C.D.,
Smith,M., Steward,C.A., Sycamore,N., Tester,J.,
Thomas,D.W.,
Tracey,A., Tromans,A., Tubby,B., Wall,M., Wallis,J.M.,
West,A.P.,
Whitehead,S.L., Willey,D.L., Wilming,L., Wray,P.W.,
Wright,M.W.,
Young,L., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E.,
Beck,S.,
Bentley,D.R., Rogers,J. and Ross,M.T.
TITLE The DNA sequence and analysis of human chromosome 13
JOURNAL Nature 428 (6982), 522-528 (2004)
PUBMED 15057823
REFERENCE 2 (bases 1 to 5006)
AUTHORS Halleck,M.S., Lawler JF,J.R., Blackshaw,S., Gao,L.,
Nagarajan,P.,
Hacker,C., Pyle,S., Newman,J.T., Nakanishi,Y., Ando,H.,
Weinstock,D., Williamson,P. and Schlegel,R.A.
TITLE Differential expression of putative transbilayer amphipath
transporters
JOURNAL (er) Physiol. Genomics 1 (3), 139-150 (1999)
PUBMED 11015572
REFERENCE 3 (bases 1 to 5006)
AUTHORS Sun,X.L., Li,D., Fang,J., Noyes,I., Casto,B., Theil,K.,
Shuler,C.
and Milo,G.E.
TITLE Changes in levels of normal ML-1 gene transcripts
associated with
the conversion of human nontumorigenic to tumorigenic
phenotypes
JOURNAL Gene Expr. 8 (2), 129-139 (1999)
PUBMED 10551800
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived
from
AK127263.1, AF236871.2, AL669971.2, AK094653.1,
AL136438.10,
AK126031.1 and AL390129.1.
On Nov 1, 2006 this sequence version replaced gi:38372937.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN
COMP
1-285 AK127263.1 1-285
286-1804 AF236871.2 24-1542
1805-1824 AK127263.1 1805-1824
1825-1825 AL669971.2 2544-2544
1826-1859 AK127263.1 1826-1859
1860-2427 AK094653.1 645-1212
2428-2428 AL136438.10 129434-129434
c
2429-2445 AK127263.1 2429-2445
2446-4018 AK126031.1 1719-3291
4019-4582 AK127263.1 4019-4582
4583-5006 AL390129.1 1540-1963
FEATURES Location/Qualifiers
source 1..5006
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="13"
/map="13q12"
gene 1..5006
/gene="ATP8A2"
/synonym="IB, ATP, ML-1, ATPIB, DKFZp434B1913"
/note="ATPase, aminophospholipid transporter-
like, class
I, type 8A, member 2"
/db_xref="GeneID:51761"
/db_xref="HGNC:13533"
/db_xref="HPRD:05795"
/db_xref="MIM:605870"
exon 1..218
/gene="ATP8A2"
/inference="alignment:Splign"
/number=1
CDS 143..3709
/gene="ATP8A2"
/codon_start=1
/product="ATPase, aminophospholipid transporter-
like,
Class I, type 8A, member 2"
/protein_id="NP_057613.4"
/db_xref="GI:117168245"
/db_xref="CCDS:CCDS41873.1"
/db_xref="GeneID:51761"
/db_xref="HGNC:13533"
/db_xref="HPRD:05795"
/db_xref="MIM:605870"
/
translation="MLNGAGLDKALKMSLPRRSRIRSSVGPVRSSLGYKKAEDEMSRA
TSVGDQLEAPARTIYLNQPHLNKFRDNQISTAKYSVLTFLPRFLYEQIRRAANAFFLF
IALLQQIPDVSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNG
MWHTIMWKEVAVGDIVKVVNGQYLPADVVLLSSSEPQAMCYVETANLDGETNLKIRQG
LSHTADMQTREVLMKLSGTIECEGPNRHLYDFTGNLNLDGKSLVALGPDQILLRGTQL
RNTQWVFGIVVYTGHDTKLMQNSTKAPLKRSNVEKVTNVQILVLFGILLVMALVSSAG
ALYWNRSHGEKNWYIKKMDTTSDNFGYNLLTFIILYNNLIPISLLVTLEVVKYTQALF
INWDTDMYYIGNDTPAMARTSNLNEELGQVKYLFSDKTGTLTCNIMNFKKCSIAGVTY
GHFPELAREPSSDDFCRMPPPCSDSCDFDDPRLLKNIEDRHPTAPCIQEFLTLLAVCH
TVVPEKDGDNIIYQASSPDEAALVKGAKKLGFVFTARTPFSVIIEAMGQEQTFGILNV
LEFSSDRKRMSVIVRTPSGRLRLYCKGADNVIFERLSKDSKYMEETLCHLEYFATEGL
RTLCVAYADLSENEYEEWLKVYQEASTILKDRAQRLEECYEIIEKNLLLLGATAIEDR
LQAGVPETIATLLKAEIKIWVLTGDKQETAINIGYSCRLVSQNMALILLKEDSLDATR
AAITQHCTDLGNLLGKENDVALIIDGHTLKYALSFEVRRSFLDLALSCKAVICCRVSP
LQKSEIVDVVKKRVKAITLAIGDGANDVGMIQTAHVGVGISGNEGMQATNNSDYAIAQ
FSYLEKLLLVHGAWSYNRVTKCILYCFYKNVVLYIIELWFAFVNGFSGQILFERWCIG
LYNVIFTALPPFTLGIFERSCTQESMLRFPQLYKITQNGEGFNTKVFWGHCINALVHS
LILFWFPMKALEHDTVLTSGHATDYLFVGNIVYTYVVVTVCLKAGLETTAWTKFSHLA
VWGSMLTWLVFFGIYSTIWPTIPIAPDMRGQATMVLSSAHFWLGLFLVPTACLIEDVA
WRAAKHTCKKTLLEEVQELETKSRVLGKAVLRDSNGKRLNERDRLIKRLGRKTPPTLF
RGSSLQQGVPHGYAFSQEEHGAVSQEEVIRAYDTTKKKSRKK"
exon 219..363
/gene="ATP8A2"
/inference="alignment:Splign"
/number=2
exon 364..463
/gene="ATP8A2"
/inference="alignment:Splign"
/number=3
exon 464..562
/gene="ATP8A2"
/inference="alignment:Splign"
/number=4
exon 563..608
/gene="ATP8A2"
/inference="alignment:Splign"
/number=5
exon 609..649
/gene="ATP8A2"
/inference="alignment:Splign"
/number=6
exon 650..723
/gene="ATP8A2"
/inference="alignment:Splign"
/number=7
exon 724..793
/gene="ATP8A2"
/inference="alignment:Splign"
/number=8
exon 794..921
/gene="ATP8A2"
/inference="alignment:Splign"
/number=9
exon 922..1033
/gene="ATP8A2"
/inference="alignment:Splign"
/number=10
exon 1034..1199
/gene="ATP8A2"
/inference="alignment:Splign"
/number=11
exon 1200..1327
/gene="ATP8A2"
/inference="alignment:Splign"
/number=12
exon 1328..1405
/gene="ATP8A2"
/inference="alignment:Splign"
/number=13
exon 1406..1494
/gene="ATP8A2"
/inference="alignment:Splign"
/number=14
exon 1495..1539
/gene="ATP8A2"
/inference="alignment:Splign"
/number=15
exon 1540..1615
/gene="ATP8A2"
/inference="alignment:Splign"
/number=16
exon 1616..1721
/gene="ATP8A2"
/inference="alignment:Splign"
/number=17
exon 1722..1804
/gene="ATP8A2"
/inference="alignment:Splign"
/number=18
exon 1805..1854
/gene="ATP8A2"
/inference="alignment:Splign"
/number=19
exon 1855..1924
/gene="ATP8A2"
/inference="alignment:Splign"
/number=20
exon 1925..2009
/gene="ATP8A2"
/inference="alignment:Splign"
/number=21
exon 2010..2149
/gene="ATP8A2"
/inference="alignment:Splign"
/number=22
exon 2150..2288
/gene="ATP8A2"
/inference="alignment:Splign"
/number=23
exon 2289..2353
/gene="ATP8A2"
/inference="alignment:Splign"
/number=24
exon 2354..2526
/gene="ATP8A2"
/inference="alignment:Splign"
/number=25
exon 2527..2710
/gene="ATP8A2"
/inference="alignment:Splign"
/number=26
exon 2711..2821
/gene="ATP8A2"
/inference="alignment:Splign"
/number=27
exon 2822..2896
/gene="ATP8A2"
/inference="alignment:Splign"
/number=28
exon 2897..3019
/gene="ATP8A2"
/inference="alignment:Splign"
/number=29
exon 3020..3098
/gene="ATP8A2"
/inference="alignment:Splign"
/number=30
exon 3099..3160
/gene="ATP8A2"
/inference="alignment:Splign"
/number=31
exon 3161..3217
/gene="ATP8A2"
/inference="alignment:Splign"
/number=32
exon 3218..3325
/gene="ATP8A2"
/inference="alignment:Splign"
/number=33
exon 3326..3414
/gene="ATP8A2"
/inference="alignment:Splign"
/number=34
exon 3415..3519
/gene="ATP8A2"
/inference="alignment:Splign"
/number=35
exon 3520..3611
/gene="ATP8A2"
/inference="alignment:Splign"
/number=36
exon 3612..5006
/gene="ATP8A2"
/inference="alignment:Splign"
/number=37
ORIGIN
1 acaggcgccg gcggtccccg ccagctagca gcccggcgag gcgctggccc
acccatggtc
61 ctcgggcggc ggcccctgcg cccagccctg cgcgtagcct ccgtctctcg
cccggggccg
121 ccgagccccc gacacgggcg agatgctgaa cggcgcaggc ctggacaaag
ctcttaagat
181 gtccctgccg cggaggtcga ggatccgctc gtccgtggga cctgttcgtt
cttctttggg
241 ctataagaag gcagaggatg agatgtcccg ggccacgtct gttggagacc
agctggaggc
301 acccgcccgc accatttacc tcaaccaacc gcatctcaac aaattccgcg
acaaccagat
361 cagtacggcc aagtacagcg tgttgacatt tctacctcga ttcttgtatg
agcagattag
421 aagagctgct aatgccttct ttctcttcat tgccttatta cagcaaattc
cagatgtatc
481 tccaacagga agatatacca ccctggtgcc attgatcatt attttaacaa
ttgcaggcat
541 caaagagatt gtagaagatt ttaagcgaca caaggcagac aatgcagtta
acaaaaagaa
601 aacaatagtg ttaagaaatg gtatgtggca taccattatg tggaaagagg
tggcagtggg
661 agacattgtg aaggtcgtca atgggcagta tcttccagca gatgtggtcc
tgctgtcatc
721 cagtgaacct caggcaatgt gttatgttga aacagctaat ctggatgggg
agacgaacct
781 taaaatacgt cagggtttga gtcacactgc tgacatgcaa acacgtgaag
ttctgatgaa
841 gttatctgga actatagagt gtgaagggcc caaccgccac ctctatgact
tcactggaaa
901 cttgaactta gatgggaaaa gccttgttgc ccttgggcct gaccagatct
tattaagagg
961 tacacagctt agaaatactc agtgggtctt tggcatagtt gtttatactg
gacacgacac
1021 caaactcatg cagaattcaa ccaaagcgcc tctcaagaga tcaaatgttg
agaaggtgac
1081 taacgtgcag atcctggtgt tgtttggcat cctcttggtc atggccttgg
tgagctcggc
1141 gggggccctg tactggaaca ggtctcatgg tgaaaagaac tggtacatca
agaagatgga
1201 caccacctca gataattttg gatacaacct actgacgttc atcatcttat
acaacaatct
1261 tattcccatc agtctgttgg tgactcttga ggttgtgaag tatactcaag
cccttttcat
1321 aaactgggac acagatatgt attatatagg aaatgacact cctgccatgg
ccaggacatc
1381 aaaccttaat gaagagcttg ggcaggtgaa atatctcttt tctgacaaga
ctggaacgct
1441 tacatgcaat atcatgaact ttaagaagtg cagcattgcc ggagtaacct
atggtcactt
1501 cccagaattg gcaagagagc cgtcttcaga tgacttctgt cggatgcctc
ctccctgtag
1561 tgattcctgt gactttgatg accccaggct gttgaagaac attgaggatc
gccatcccac
1621 agccccttgc attcaggagt tcctcaccct tctggccgtg tgccacacgg
ttgttcctga
1681 gaaggatgga gataacatca tctaccaggc ctcttcccca gatgaagctg
ctttggtgaa
1741 aggagctaaa aagctgggct ttgtcttcac agccagaaca ccattctcag
tcatcataga
1801 agcgatggga caggaacaaa cattcggaat ccttaatgtc ctggaatttt
ctagtgacag
1861 aaaaagaatg tctgtaattg ttcgaactcc ttcaggacga cttcggcttt
actgtaaagg
1921 ggctgataat gtgatttttg agagactttc aaaagactca aaatatatgg
aggaaacatt
1981 atgccatctg gaatactttg ccacggaagg cttgcggact ctctgtgtgg
cttatgctga
2041 tctctctgag aatgagtatg aggagtggct gaaagtctat caggaagcca
gcaccatatt
2101 gaaggacaga gctcaacggt tggaagagtg ttacgagatc attgagaaga
atttgctgct
2161 acttggagcc acagccatag aagatcgcct tcaagcagga gttccagaaa
ccatcgcaac
2221 actgttgaag gcagaaatta aaatatgggt gttgacagga gacaaacaag
aaactgcgat
2281 taatataggg tattcctgcc gattggtatc gcagaatatg gcccttatcc
tattgaagga
2341 ggactctttg gatgccacaa gggcagccat tactcagcac tgcactgacc
ttgggaattt
2401 gctgggcaag gaaaatgacg tggccctgat catcgatggc cacaccctga
agtacgcgct
2461 ctccttcgaa gtccggagga gtttcctgga tttggcactc tcgtgcaaag
cggtcatatg
2521 ctgcagagtg tctcctctgc agaagtctga gatagtggat gtggtgaaga
agcgggtgaa
2581 ggccatcacc ctcgccatcg gagacggcgc caacgatgtc gggatgatcc
agacagccca
2641 cgtgggtgtg ggaatcagtg ggaatgaagg catgcaggcc accaacaact
cggattacgc
2701 catcgcacag ttttcctact tagagaagct tctgttggtt catggagcct
ggagctacaa
2761 ccgggtgacc aagtgcatct tgtactgctt ctataagaac gtggtcctgt
atattattga
2821 gctttggttc gcctttgtta atggattttc tgggcagatt ttatttgaac
gttggtgcat
2881 cggcctgtac aatgtgattt tcaccgcttt gccgcccttc actctgggaa
tctttgagag
2941 gtcttgcact caggagagca tgctcaggtt tccccagctc tacaaaatca
cccagaatgg
3001 cgaaggcttc aacacaaagg ttttctgggg tcactgcatc aacgccttgg
tccactccct
3061 catcctcttc tggtttccca tgaaagctct ggagcatgat actgtgttga
caagtggtca
3121 tgctaccgac tatttatttg ttggaaatat tgtttacaca tatgttgttg
ttactgtttg
3181 tctgaaagct ggtttggaga ccacagcttg gactaaattc agtcatctgg
ctgtctgggg
3241 aagcatgctg acctggctgg tgttttttgg catctactcg accatctggc
ccaccattcc
3301 cattgctcca gatatgagag gacaggcaac tatggtcctg agctccgcac
acttctggtt
3361 gggattattt ctggttccta ctgcctgttt gattgaagat gtggcatgga
gagcagccaa
3421 gcacacctgc aaaaagacat tgctggagga ggtgcaggag ctggaaacca
agtctcgagt
3481 cctgggaaaa gcggtgctgc gggatagcaa tggaaagagg ctgaacgagc
gcgaccgcct
3541 gatcaagagg ctgggccgga agacgccccc gacgctgttc cggggcagct
ccctgcagca
3601 gggcgtcccg catgggtatg ctttttctca agaagaacac ggagctgtta
gtcaggaaga
3661 agtcatccgt gcttatgaca ccaccaaaaa gaaatccagg aagaaataag
acatgaattt
3721 tcctgactga tcttaggaaa gagattcagt ttgttgcacc cagtgttaac
acatctttgt
3781 cagagaagac tggcgtcagc agccaaaaca ccaggaaaca catttctgtg
gccttagcca
3841 agcagtttgt tagttacata ttccctcgca aacctggagt gcagaccaca
ggggaagcta
3901 tctttgccct cccaactcgt ctgcagtgct tagcctaact tttgtttatg
tcgttatgaa
3961 gcattcaact gtgctctgtg aggtgtgaaa ttaaaaacat tatgtttcac
caatatttaa
4021 acatcagtac tagttgtcct gggagaaagg gaaaggagtt ttatgttgcg
tgagaggccc
4081 atcctgtgta attggagcag ggcacacttg cttcctgttg agttaactca
gaggttaagt
4141 ccaacgggcc acatgcagac ttcactgtag gcaggttgct ctcctgcttt
gattcctgtt
4201 ttgtgtgtaa aattggcata aacttcttga ttgcagtgaa atcacaaaat
tctctatcgg
4261 ggtggtcaac ctgagaacat ttatttgaac ctcttagcca catttccagc
agggcaaacc
4321 aactgatgcc ctggaagagt cttccgcacc ctctccaggt gcactcggcc
cagtcctgcc
4381 gccgtgtcca ggcgcccctc acccccacac ctgctgcatg
gctggc
*************************************************************
cacaccactcagtgcatggcggccgatgggcagccaacccaaacccgcgcctttccttgt
tccactgcagactcagatacagatgcgaaaaattccttcttccaccgcccttctcgttct
gtaaagaaagaaaagaaacatagcctttctgcatatattctaaacgtctctctgcctctg
tctgacatggggccaccccacaggtcagagtggtggtagaaccccttcaggactcccagc
cgtggtcaggctctgaatactcccttcccaacatccagactgctgggcctttggcatcca
cttacattagaacccacgtttgtttcagagcacattttggactttcactgttgggaaatg
aatgaatttataacatgcctg
************************************************************
4807 cac agcgaaggaa cacacctgtc gctcttagct ctagagtcag
aggatgagta
4861 aacccagatg caagagtata ggacattgag tggggagaac aagacgacca
cagaagtcct
4921 cagaaggaga aggaaggaca cggagacact gagaggagga cacagaggaa
tcgccaccag
4981 atctttgcag tagaaactct gaaata


2)

LOCUS ES480467 604 bp mRNA linear EST 16-
MAY-2007
DEFINITION gmapov_0016m13.pDNRF2 Gadus morhua ovary library gmapov
Gadus
morhua cDNA, mRNA sequence.
ACCESSION ES480467
VERSION ES480467.1 GI:146758534
KEYWORDS EST.
LOCUS CO871604 386 bp mRNA linear EST 13-
SEP-2004
DEFINITION EST00417 brain and spinal cord cDNA library in Gecko Gekko
japonicus cDNA clone sj02a159, mRNA sequence.
ACCESSION CO871604
VERSION CO871604.1 GI:51107098
KEYWORDS EST.
SOURCE Gekko japonicus
ORGANISM Gekko japonicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
Euteleostomi;
Lepidosauria; Squamata; Scleroglossa; Gekkota; Gekkonidae;
Gekkoninae; Gekko.
REFERENCE 1 (bases 1 to 386)
AUTHORS Gu,X., Ding,F., Liu,Y., Liu,M., Shen,M. and Gong,L.
TITLE Analysis of expressed sequences tags and cloning of full
length
cDNA from brain and spinal cord cDNA library in Gecko
(2004h)
JOURNAL Unpublished (2004)
COMMENT Contact: Gu Xiaosong
The Key Laboratory of Neuroregeneration of Jiangsu
Province
Nantong Medical college
Qixiu Road 19, Nantong city, Jiangsu Province, P.R.China
Tel: 86-513-5051800
Fax: 86-513-5511585
Email: neurongu@xxxxxxxxxxxxxxxx
FEATURES Location/Qualifiers
source 1..386
/organism="Gekko japonicus"
/mol_type="mRNA"
/db_xref="taxon:146911"
/clone="sj02a159"
/tissue_type="brain and spinal cord"
/clone_lib="brain and spinal cord cDNA library in
Gecko"
ORIGIN


cacaccactcagtgcatggcggccgatgggcagccaacccaaacccgcgcctttccttgt
tccactgcagactcagatacagatgcgaaaaattccttcttccaccgcccttctcgttct
gtaaagaaagaaaagaaacatagcctttctgcatatattctaaacgtctctctgcctctg
tctgacatggggccaccccacaggtcagagtggtggtagaaccccttcaggactcccagc
cgtggtcaggctctgaatactcccttcccaacatccagactgctgggcctttggcatcca
cttacattagaacccacgtttgtttcagagcacattttggactttcactgttgggaaatg
aatgaatttataacatgcctg


.

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